PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000187.1_g00041.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 360aa    MW: 40049.9 Da    PI: 8.6047
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000187.1_g00041.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00056276298223
                              EETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                              +Cp C+ +Fs+   L+ H ++ H
  Itr_sc000187.1_g00041.1 276 QCPLCNLRFSSGTALVDHVQKvH 298
                              7******************9988 PP
2zf-C2H215.74.2e-05310332223
                              EETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                              +Cp C+k F+++ +L+ H  + H
  Itr_sc000187.1_g00041.1 310 VCPRCSKGFRDPVSLVEHVERdH 332
                              7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1110.109.3E-11153207IPR000058Zinc finger, AN1-type
SuperFamilySSF1183104.19E-9155208No hitNo description
PROSITE profilePS510398.039160213IPR000058Zinc finger, AN1-type
PfamPF014282.5E-8163203IPR000058Zinc finger, AN1-type
SMARTSM003550.027275298IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.71E-5276328No hitNo description
PROSITE patternPS000280277298IPR007087Zinc finger, C2H2
PROSITE profilePS501578.6309337IPR007087Zinc finger, C2H2
SMARTSM003559.1309332IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280311332IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGTPAFPNLG KHCSVDDCRQ IDFLPFTCDC CHKYYLDFTI KRASKLTRCI STARIKTPCP  60
QKEKFSSPWF GTRGDHHIGV TLTLWLSEID LVSPHVFCLD HRSYARHQCP KGNKHDVTVV  120
ICPLCAKGVR LIPDEDPNIT WQSHVNTDCD PSNYEKATKK RKCPVPRCKE VLTFSNTIKC  180
RDCDVDHCLK HRFGPDHNCP GPKKPEPAFQ FLGFLSRKEE PKKAPAPSSS RWTTSLLNAA  240
TSGIAKLSNE FNQALQIGGD GGGQAQSSVN KQQVEQCPLC NLRFSSGTAL VDHVQKVHEK  300
KGVMNVSIDV CPRCSKGFRD PVSLVEHVER DHGVSRQAKL ALSRQHNITL GDIVPTVAPS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009765392.11e-129PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
RefseqXP_016478515.11e-129PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
SwissprotQ8VZ426e-99SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLM1CLM61e-125M1CLM6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000700441e-123(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53112237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-100C2H2 family protein